Cheng Zeng

Computational Materials Scientist at University of Florida.

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Postdoctoral Associate

Email:c.zeng@ufl.edu or cheng_zeng1@alumni.brown.edu

Hi! I am currently a postdoc working with Prof. Mingjie Liu at University of Florida. My research focuses on molecular-graph generative models and AI-driven computational study on materials for energy applications. My research interests span a multitude of topics including materials design, machine learning, electrochemistry, generative modeling, computational catalysis and renewable energy. I am interested in solving complex engineering problems with machine learning, physical simulations and numerical methods.

From 2022 to 2024, I worked at the Instutite for Experiential AI and Roux institute of Northeastern University on highly interdisciplinary topics across computational materials science, additive manufacturing, wind energy and human-data interaciton, mentored by Prof. Nathan Post and Jack Lesko. Prior to joining Roux, I received a PhD in Engineering at Brown University. En route to my PhD degree, I also received a secondary Master’s degree in Data Science via Brown’s Open Graduate Education Program. At Brown, I worked at the Catalyst Design Lab under the direction of Andrew Peterson. My PhD research focused on machine learning potentials and force–displacement phenomenological models for rational catalyst design. Before Brown, I got a Bachelor and Master in Materials Science and Engineering from Tsinghua University. At Tsinghua, I worked with Yunhan Ling on oxide films/coatings resistant to hydrogen permeation.

Recent news [archive]

2025/07 Our paper MolGuidance, a follow-up work of PropMolFlow, has been accepted in ICML 2025 Generative AI for Biology (GenBio) Workshop. In this work, we integrate three advanced property‐guidance strategies—classifier‐free guidance, autoguidance, and model guidance—into an SE(3)‐equivariant flow‐matching framework for conditional molecule generation.
2025/05 Our PropMolFlow framework—now available online—uses flow matching parameterized by an SE(3)-equivariant graph neural network for conditional molecular generation. We demonstrate competitive performance against state-of-the-art diffusion models across a range of molecular properties, while maintaining high structural validity, stability, and sampling efficiency. To support reproducibility and further research, we also release two datasets: (1) DFT-computed properties for molecules generated with PropMolFlow, and (2) an updated QM9 SDF file (based on the DeepChem release) in which all bond-order and charge inconsistencies have been corrected.
2025/01 I officially joined University of Florida Department of Chemistry as a postdoc to work on molecular-graph generative modeling and AI-driven computational simulations.

Selected publications [full list]

  1. d_vae_hea.png
    Data-efficient and Interpretable Inverse Materials Design using a Disentangled Variational Autoencoder
    Cheng Zeng, Zulqarnain Khan, and Nathan L. Post
    AI & Materials, Dec 2024
  2. ml-hea-corr.png
    Machine learning accelerated discovery of corrosion-resistant high-entropy alloys
    Cheng Zeng, Andrew Neils, Jack Lesko, and Nathan Post
    Computational Materials Science, Mar 2024
  3. copt-np-structures.png
    Phase Stability of Large-Size Nanoparticle Alloy Catalysts at Ab Initio Quality Using a Nearsighted Force-Training Approach
    Cheng Zeng, Sushree Jagriti Sahoo, Andrew J. Medford, and Andrew A. Peterson
    J. Phys. Chem. C, Dec 2023
  4. strain-trends.png
    Strain in Catalysis: Rationalizing Material, Adsorbate, and Site Susceptibilities to Biaxial Lattice Strain
    Cheng Zeng, Tuhina Adit Maark, and Andrew A. Peterson
    J. Phys. Chem. C, Dec 2022
  5. nft.png
    A nearsighted force-training approach to systematically generate training data for the machine learning of large atomic structures
    Cheng Zeng, Xi Chen, and Andrew A. Peterson
    The Journal of Chemical Physics, Feb 2022